Very possible that the relay contacts are oxidized and current is crossing them while they are open. They will benefit from some contact cleaner and a light cloth (don't sand them) if you can disassemble sealed relays without wrecking them. Since you've already disassembled the flasher unit, you can replace the electrolytics with Radio Shack parts in case the caps are leaking. Replacement relays are sometimes found on eBay. I probably have a spare sitting around.
You may already be using a replacement flasher since I recall all the originals I've seen are Bosch or Hella. But I remember when aftermarkets were available.
I am guessing you have isolated that it's not the emergency flasher switch causing the relay to short. That switch is notorious for turning itself on because of a poor mechanical design, but you'd notice the flasher switch activated.
BTW, the flasher should always have 12V present with the signals on or off to power the emergency flashers.
Jim


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